How to interpret the HTML report generated by cellCellReport function
23 September 2019
Package
scTensor 1.0.13
Contents
- 1 Introduction
- 2 Interpretation of “1. About scTensor Algorithm”
- 3 Interpretation of “2. Global statistics and plots”
- 4 Interpretation of “3. Ligand-Cell Patterns”
- 5 Interpretation of “4. Receptor-Cell Patterns”
- 6 Interpretation of “5. LR-pair Patterns”
- 7 Interpretation of “6. CCI-wise Hypergraph”
- 8 Interpretation of “7. Gene-wise Hypergraph”
- 9 Interpretation of “8. (Ligand-Cell, Receptor-Cell, LR-pair) Patterns”
- Session information
1 Introduction
Here, we explain the way to interpret of HTML report generated by cellCellReport.
If cellCellDecomp is properly finished, we can perform cellCellReport
function to output the HTML report.
The result can be confirmed by typing example(cellCellReport).
The report will be generated in the temporary directory (it costs 5 to 10 minutes).
Figure1 : HTML report of cellCellReport
2 Interpretation of “1. About scTensor Algorithm”
The 1st item describes the overview of scTensor and other CCI-related packages.