## -------------------------------------------------------------------------- suppressPackageStartupMessages(library(genbankr)) smpfile = system.file("sample.gbk", package="genbankr") gb = readGenBank(smpfile) gb ## -------------------------------------------------------------------------- genes(gb) ## ---- results='hide'------------------------------------------------------- cds(gb) exons(gb) transcripts(gb) ## ---- results='hide'------------------------------------------------------- variants(gb) otherFeatures(gb) ## -------------------------------------------------------------------------- accession(gb) vers(gb) ## -------------------------------------------------------------------------- seqinfo(gb) ## -------------------------------------------------------------------------- getSeq(gb) ## -------------------------------------------------------------------------- pg = parseGenBank(smpfile) str(pg, max.level = 1) ## -------------------------------------------------------------------------- gbf = readGenBank(smpfile, ret.seq = FALSE) gbf ## -------------------------------------------------------------------------- gbkfile = GenBankFile(smpfile) gb2 = import(gbkfile) ## -------------------------------------------------------------------------- gba = GBAccession("U49845.1") gba ## -------------------------------------------------------------------------- readGenBank(gba, partial=TRUE) ## -------------------------------------------------------------------------- getSeq(gbkfile) ## -------------------------------------------------------------------------- parseGenBank(smpfile, ret.anno=FALSE) ## -------------------------------------------------------------------------- gbr = readGenBank(smpfile) tx = makeTxDbFromGenBank(gbr) tx