Version 1.15.1 * Version bump to get inline with the Bioconductor number Version 1.9.1 * removed a bug in construct.msp which took a data.frame as the second argument where the documentation was claiming it could handle a nested list. Since the latter option is more general, the code was changed to match the documentation (signalled by Wenzhang Chen). Version 1.3.5 * Include xset object in GCresults data file Version 1.3.4 * Optimize alignmentLC function Version 1.3.3 * various small changes in code (esthetic only) Version 1.3.2 * Changed LC settings to explicitly include retcor arguments * Corrected LC bug on the PeakTable export when data files are stored into multiple subfolders Version 1.3.1 * Changed LC settings so that the retcor algorithm is passed correctly to the underlying XCMS function * Changed LC pipeline so that all user-defined settings are actually used Version 1.2.0 * Adopted Oct 2014 DEVELOPMENT VERSION 1.1.0 * updated email address maintainer * fixed an issue in GC pipeline when fewer files are analysed than the min.class.size value of the "betweenSamples" setting. Changes in runGC.R and matchSamples2Samples.R VERSION 1.0.0 * Original Bioconductor release.