traseR

DOI: 10.18129/B9.bioc.traseR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see traseR.

GWAS trait-associated SNP enrichment analyses in genomic intervals

Bioconductor version: 3.9

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("traseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("traseR")

 

PDF	R Script	Perform GWAS trait-associated SNP enrichment analyses in genomic intervals
PDF		Reference Manual

Details

biocViews	Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software
Version	1.14.0
In Bioconductor since	BioC 3.2 (R-3.2) (4 years)
License	GPL
Depends	R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19
Imports
LinkingTo
Suggests	BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	traseR_1.14.0.tar.gz
Windows Binary	traseR_1.14.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	traseR_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/traseR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/traseR
Package Short Url	https://bioconductor.org/packages/traseR/
Package Downloads Report	Download Stats