spliceSites

DOI: 10.18129/B9.bioc.spliceSites    

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see spliceSites.

A bioconductor package for exploration of alignment gap positions from RNA-seq data

Bioconductor version: 3.9

Performs splice centered analysis on RNA-seq data.

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spliceSites")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceSites")

 

PDF	R Script	spliceSites
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, Proteomics, RNAseq, Software
Version	1.31.0
In Bioconductor since	BioC 2.13 (R-3.0) (6 years)
License	GPL-2
Depends	methods, rbamtools (>= 2.14.3), refGenome (>= 1.6.0), Biobase, Biostrings(>= 2.28.0)
Imports	BiocGenerics, doBy, seqLogo, IRanges
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	spliceSites_1.31.0.tar.gz
Windows Binary	spliceSites_1.31.0.zip
Mac OS X 10.11 (El Capitan)	spliceSites_1.31.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/spliceSites
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spliceSites
Package Short Url	https://bioconductor.org/packages/spliceSites/
Package Downloads Report	Download Stats