sigsquared

DOI: 10.18129/B9.bioc.sigsquared    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see sigsquared.

Gene signature generation for functionally validated signaling pathways

Bioconductor version: 3.9

By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.

Author: UnJin Lee

Maintainer: UnJin Lee <unjin at uchicago.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sigsquared")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigsquared")

 

PDF	R Script	SigSquared
PDF		Reference Manual

Details

biocViews	Software
Version	1.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (4.5 years)
License	GPL version 3
Depends	R (>= 3.2.0), methods
Imports	Biobase, survival
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sigsquared_1.16.0.tar.gz
Windows Binary	sigsquared_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	sigsquared_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sigsquared
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sigsquared
Package Short Url	https://bioconductor.org/packages/sigsquared/
Package Downloads Report	Download Stats