riboSeqR

DOI: 10.18129/B9.bioc.riboSeqR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments

Bioconductor version: 3.9

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")

 

PDF	R Script	riboSeqR
PDF		Reference Manual
Text		NEWS

Details

biocViews	Genetics, RiboSeq, Sequencing, Software, Visualization
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	GPL-3
Depends	R (>= 3.0.2), methods, GenomicRanges, abind
Imports	Rsamtools, IRanges, baySeq, GenomeInfoDb, seqLogo
LinkingTo
Suggests	BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	riboSeqR_1.18.0.tar.gz
Windows Binary	riboSeqR_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	riboSeqR_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/riboSeqR
Package Short Url	https://bioconductor.org/packages/riboSeqR/
Package Downloads Report	Download Stats