nucleR

DOI: 10.18129/B9.bioc.nucleR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see nucleR.

Nucleosome positioning package for R

Bioconductor version: 3.9

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Diego Gallego <diego.gallego at irbbarcelona.org>

Citation (from within R, enter citation("nucleR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nucleR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")

 

PDF R Script Vignette Title
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software
Version 2.16.0
In Bioconductor since BioC 2.9 (R-2.14) (8 years)
License LGPL (>= 3)
Depends methods
Imports Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils
LinkingTo
Suggests Starr, BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nucleR_2.16.0.tar.gz
Windows Binary nucleR_2.16.0.zip
Mac OS X 10.11 (El Capitan) nucleR_2.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nucleR
Package Short Url https://bioconductor.org/packages/nucleR/
Package Downloads Report Download Stats

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