lfa

DOI: 10.18129/B9.bioc.lfa    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see lfa.

Logistic Factor Analysis for Categorical Data

Bioconductor version: 3.9

LFA is a method for a PCA analogue on Binomial data via estimation of latent structure in the natural parameter.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("lfa")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("lfa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lfa")

 

PDF R Script lfa Package
PDF   Reference Manual

Details

biocViews DimensionReduction, PrincipalComponent, SNP, Software
Version 1.14.0
In Bioconductor since BioC 3.2 (R-3.2) (4 years)
License GPL-3
Depends R (>= 3.2)
Imports corpcor
LinkingTo
Suggests knitr, ggplot2
SystemRequirements
Enhances
URL https://github.com/StoreyLab/lfa
BugReports https://github.com/StoreyLab/lfa/issues
Depends On Me
Imports Me gcatest
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lfa_1.14.0.tar.gz
Windows Binary lfa_1.14.0.zip
Mac OS X 10.11 (El Capitan) lfa_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/lfa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lfa
Package Short Url https://bioconductor.org/packages/lfa/
Package Downloads Report Download Stats

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