ipdDb

DOI: 10.18129/B9.bioc.ipdDb    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ipdDb.

IPD IMGT/HLA and IPD KIR database for Homo sapiens

Bioconductor version: 3.9

All alleles from the IPD IMGT/HLA and IPD KIR database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Author: Steffen Klasberg

Maintainer: Steffen Klasberg <klasberg at dkms-lab.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ipdDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ipdDb")

 

HTML	R Script	ipdDb
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, GenomicVariation, SequenceMatching, Software, VariantAnnotation
Version	1.2.0
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	Artistic-2.0
Depends	R (>= 3.5.0), methods, AnnotationDbi(>= 1.43.1), AnnotationHub
Imports	Biostrings, GenomicRanges, RSQLite, DBI, IRanges, stats, assertthat
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/DKMS-LSL/ipdDb
BugReports	https://github.com/DKMS-LSL/ipdDb/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ipdDb_1.2.0.tar.gz
Windows Binary	ipdDb_1.2.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	ipdDb_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ipdDb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ipdDb
Package Short Url	https://bioconductor.org/packages/ipdDb/
Package Downloads Report	Download Stats