igvR

DOI: 10.18129/B9.bioc.igvR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see igvR.

igvR: integrative genomics viewer

Bioconductor version: 3.9

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("igvR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("igvR")

 

HTML	R Script	igvR: programmatic access to igv.js, a browser-based genome track viewer
PDF		Reference Manual
Text		LICENSE

Details

biocViews	GenomeBrowsers, Software, ThirdPartyClient, Visualization
Version	1.4.0
In Bioconductor since	BioC 3.7 (R-3.5) (1.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.5.0), GenomicRanges, VariantAnnotation, GenomicAlignments, rtracklayer, BrowserViz(>= 2.5.14)
Imports	methods, BiocGenerics, httpuv, utils
LinkingTo
Suggests	RUnit, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	igvR_1.4.0.tar.gz
Windows Binary	igvR_1.4.0.zip
Mac OS X 10.11 (El Capitan)	igvR_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/igvR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/igvR
Package Short Url	https://bioconductor.org/packages/igvR/
Package Downloads Report	Download Stats