iCheck

DOI: 10.18129/B9.bioc.iCheck    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see iCheck.

QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Bioconductor version: 3.9

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Author: Weiliang Qiu [aut, cre], Brandon Guo [aut, ctb], Christopher Anderson [aut, ctb], Barbara Klanderman [aut, ctb], Vincent Carey [aut, ctb], Benjamin Raby [aut, ctb]

Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCheck")

 

PDF	R Script	iCheck
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel
Version	1.14.0
In Bioconductor since	BioC 3.2 (R-3.2) (4 years)
License	GPL (>= 2)
Depends	R (>= 3.2.0), Biobase, lumi, gplots
Imports	stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCheck_1.14.0.tar.gz
Windows Binary	iCheck_1.14.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	iCheck_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCheck
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iCheck
Package Short Url	https://bioconductor.org/packages/iCheck/
Package Downloads Report	Download Stats