geneRecommender

DOI: 10.18129/B9.bioc.geneRecommender    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see geneRecommender.

A gene recommender algorithm to identify genes coexpressed with a query set of genes

Bioconductor version: 3.9

This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.

Author: Gregory J. Hather <ghather at stat.berkeley.edu>, with contributions from Art B. Owen <art at stat.stanford.edu> and Terence P. Speed <terry at stat.berkeley.edu>

Maintainer: Greg Hather <ghather at stat.berkeley.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneRecommender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneRecommender")

 

PDF	R Script	Using the geneRecommender Package
PDF		Reference Manual

Details

biocViews	Clustering, Microarray, Software
Version	1.56.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License	GPL (>= 2)
Depends	R (>= 1.8.0), Biobase(>= 1.4.22), methods
Imports	Biobase, methods, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	geneRecommender_1.56.0.tar.gz
Windows Binary	geneRecommender_1.56.0.zip
Mac OS X 10.11 (El Capitan)	geneRecommender_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/geneRecommender
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/geneRecommender
Package Short Url	https://bioconductor.org/packages/geneRecommender/
Package Downloads Report	Download Stats