covEB

DOI: 10.18129/B9.bioc.covEB    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see covEB.

Empirical Bayes estimate of block diagonal covariance matrices

Bioconductor version: 3.9

Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.

Author: C. Pacini

Maintainer: C. Pacini <clarepacini at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("covEB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("covEB")

 

PDF	R Script	covEB
PDF		Reference Manual

Details

biocViews	Bayesian, GeneExpression, ImmunoOncology, Microarray, Preprocessing, RNASeq, Software, StatisticalMethod
Version	1.10.0
In Bioconductor since	BioC 3.4 (R-3.3) (3 years)
License	GPL-3
Depends	R (>= 3.3), mvtnorm, igraph, gsl, Biobase, stats, LaplacesDemon, Matrix
Imports
LinkingTo
Suggests	curatedBladderData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	covEB_1.10.0.tar.gz
Windows Binary	covEB_1.10.0.zip
Mac OS X 10.11 (El Capitan)	covEB_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/covEB
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/covEB
Package Short Url	https://bioconductor.org/packages/covEB/
Package Downloads Report	Download Stats