DOI: 10.18129/B9.bioc.countsimQC    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see countsimQC.

Compare Characteristic Features of Count Data Sets

Bioconductor version: 3.9

countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at>

Citation (from within R, enter citation("countsimQC")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


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biocViews ExperimentalDesign, ImmunoOncology, Microbiome, QualityControl, RNASeq, ReportWriting, SingleCell, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License GPL (>=2)
Depends R (>= 3.5)
Imports rmarkdown (>= 0.9.5), edgeR, DESeq2(>= 1.16.0), dplyr, tidyr, ggplot2, grDevices, tools, SummarizedExperiment, genefilter, DT, GenomeInfoDbData, caTools, randtests, stats, utils, methods
Suggests knitr, testthat
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Source Package countsimQC_1.2.0.tar.gz
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