cnvGSA

DOI: 10.18129/B9.bioc.cnvGSA    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cnvGSA.

Gene Set Analysis of (Rare) Copy Number Variants

Bioconductor version: 3.9

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

Author: Daniele Merico <daniele.merico at gmail.com>, Robert Ziman <rziman at gmail.com>; packaged by Joseph Lugo <joseph.r.lugo at gmail.com>

Maintainer: Joseph Lugo <joseph.r.lugo at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cnvGSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cnvGSA")

 

PDF		cnvGSA - Gene-Set Analysis of Rare Copy Number Variants
PDF		cnvGSAUsersGuide.pdf
PDF		Reference Manual

Details

biocViews	MultipleComparison, Software
Version	1.28.0
In Bioconductor since	BioC 2.10 (R-2.15) (7.5 years)
License	LGPL
Depends	brglm, doParallel, foreach, GenomicRanges, methods, splitstackshape
Imports
LinkingTo
Suggests	cnvGSAdata, org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me	cnvGSAdata
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cnvGSA_1.28.0.tar.gz
Windows Binary	cnvGSA_1.28.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	cnvGSA_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cnvGSA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cnvGSA
Package Short Url	https://bioconductor.org/packages/cnvGSA/
Package Downloads Report	Download Stats