DOI: 10.18129/B9.bioc.brainImageR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see brainImageR.

A Framework for visualizing gene set enrichment throughout neurodevelopment

Bioconductor version: 3.9

BrainImageR is a package that provides the user with information of where in the human brain their gene set corresponds to. This is provided both as a continuous variable and as a easily-interpretable image. BrainImageR has additional functionality of identifying approximately when in developmental time that a gene expression dataset corresponds to. Both the spatial gene set enrichment and the developmental time point prediction are assessed in comparison to the Allen Brain Atlas reference data.

Author: Sara Linker [aut, cre]

Maintainer: Sara B Linker <sara.linker at>

Citation (from within R, enter citation("brainImageR")):


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biocViews GeneExpression, GenePrediction, GeneSetEnrichment, Software, Transcription
Version 1.1.0
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License CC BY-SA 4.0
Depends R (>= 3.5)
Imports BiocGenerics, ExperimentHub, ggplot2, grDevices, grid, gridExtra, methods, randomForest, RColorBrewer, stats, testthat
Suggests knitr, rmarkdown
Depends On Me
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