TNBC.CMS

DOI: 10.18129/B9.bioc.TNBC.CMS    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TNBC.CMS.

TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes

Bioconductor version: 3.9

This package implements a machine learning-based classifier for the assignment of consensus molecular subtypes to TNBC samples. It also provides functions to summarize genomic and clinical characteristics.

Author: Doyeong Yu, Jihyun Kim, In Hae Park, Charny Park

Maintainer: Doyeong Yu <nachoryu at ncc.re.kr>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TNBC.CMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TNBC.CMS")

 

PDF	R Script	TNBC.CMS.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Clustering, GeneExpression, GenePrediction, Software, SupportVectorMachine
Version	1.0.0
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	GPL-3
Depends	R (>= 3.6.0), e1071, quadprog, SummarizedExperiment
Imports	GSVA(>= 1.26.0), pheatmap, grDevices, RColorBrewer, pracma, GGally, R.utils, forestplot, ggplot2, ggpubr, survival, grid, stats, methods
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TNBC.CMS_1.0.0.tar.gz
Windows Binary	TNBC.CMS_1.0.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	TNBC.CMS_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TNBC.CMS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TNBC.CMS
Package Short Url	https://bioconductor.org/packages/TNBC.CMS/
Package Downloads Report	Download Stats