SemDist

DOI: 10.18129/B9.bioc.SemDist    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SemDist.

Information Accretion-based Function Predictor Evaluation

Bioconductor version: 3.9

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

Author: Ian Gonzalez and Wyatt Clark

Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SemDist")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SemDist")

 

PDF	R Script	introduction.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Classification, GO, Software
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	GPL (>= 2)
Depends	R (>= 3.1), AnnotationDbi, GO.db, annotate
Imports
LinkingTo
Suggests	GOSemSim
SystemRequirements
Enhances
URL	http://github.com/iangonzalez/SemDist
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SemDist_1.18.0.tar.gz
Windows Binary	SemDist_1.18.0.zip
Mac OS X 10.11 (El Capitan)	SemDist_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SemDist
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SemDist
Package Short Url	https://bioconductor.org/packages/SemDist/
Package Downloads Report	Download Stats