RandomWalkRestartMH

DOI: 10.18129/B9.bioc.RandomWalkRestartMH    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RandomWalkRestartMH.

Random walk with restart on multiplex and heterogeneous Networks

Bioconductor version: 3.9

This package performs Random Walk with Restart on multiplex and heterogeneous networks. It is described in the following article: "Random Walk With Restart On Multiplex And Heterogeneous Biological Networks". https://www.biorxiv.org/content/early/2017/08/30/134734 .

Author: Alberto Valdeolivas Urbelz <alvaldeolivas at gmail.com>

Maintainer: Alberto Valdeolivas Urbelz <alvaldeolivas at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RandomWalkRestartMH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RandomWalkRestartMH")

 

PDF	R Script	Random Walk with Restart on Multiplex and Heterogeneous Networks
PDF		Reference Manual

Details

biocViews	BioCarta, BiomedicalInformatics, GenePrediction, GraphAndNetwork, KEGG, MathematicalBiology, Network, NetworkInference, Pathways, Reactome, Software, SomaticMutation, SystemsBiology
Version	1.4.0
In Bioconductor since	BioC 3.7 (R-3.5) (1.5 years)
License	GPL (>= 2)
Depends	R (>= 3.5.0)
Imports	igraph, Matrix, dnet, methods
LinkingTo
Suggests	BiocStyle, testthat
SystemRequirements
Enhances
URL	https://www.biorxiv.org/content/early/2017/08/30/134734
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RandomWalkRestartMH_1.4.0.tar.gz
Windows Binary	RandomWalkRestartMH_1.4.0.zip
Mac OS X 10.11 (El Capitan)	RandomWalkRestartMH_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RandomWalkRestartMH
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RandomWalkRestartMH
Package Short Url	https://bioconductor.org/packages/RandomWalkRestartMH/
Package Downloads Report	Download Stats