PICS

DOI: 10.18129/B9.bioc.PICS    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq

Bioconductor version: 3.9

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

 

PDF	R Script	The PICS users guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq, Clustering, Sequencing, Software, Visualization
Version	2.28.0
In Bioconductor since	BioC 2.6 (R-2.11) (9.5 years)
License	Artistic-2.0
Depends	R (>= 2.14.0), BiocGenerics(>= 0.1.3)
Imports	methods, stats4, IRanges, GenomicRanges, graphics, grDevices, stats, Rsamtools, GenomicAlignments, S4Vectors
LinkingTo
Suggests	ShortRead, rtracklayer, parallel
SystemRequirements	GSL (GNU Scientific Library)
Enhances
URL
Depends On Me
Imports Me	PING
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PICS_2.28.0.tar.gz
Windows Binary	PICS_2.28.0.zip
Mac OS X 10.11 (El Capitan)	PICS_2.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PICS
Package Short Url	https://bioconductor.org/packages/PICS/
Package Downloads Report	Download Stats