PCAN

DOI: 10.18129/B9.bioc.PCAN    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PCAN.

Phenotype Consensus ANalysis (PCAN)

Bioconductor version: 3.9

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Author: Matthew Page and Patrice Godard

Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>

Citation (from within R, enter citation("PCAN")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PCAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCAN")

 

HTML R Script Assessing gene relevance for a set of phenotypes
PDF   Reference Manual

Details

biocViews Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation
Version 1.12.0
In Bioconductor since BioC 3.3 (R-3.3) (3.5 years)
License CC BY-NC-ND 4.0
Depends R (>= 3.3), BiocParallel
Imports grDevices, stats
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCAN_1.12.0.tar.gz
Windows Binary PCAN_1.12.0.zip
Mac OS X 10.11 (El Capitan) PCAN_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PCAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCAN
Package Short Url https://bioconductor.org/packages/PCAN/
Package Downloads Report Download Stats

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