OmicsMarkeR

DOI: 10.18129/B9.bioc.OmicsMarkeR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see OmicsMarkeR.

Classification and Feature Selection for 'Omics' Datasets

Bioconductor version: 3.9

Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.

Author: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Maintainer: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OmicsMarkeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmicsMarkeR")

 

PDF	R Script	A Short Introduction to the OmicMarkeR Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, FeatureExtraction, Metabolomics, Software
Version	1.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (4.5 years)
License	GPL-3
Depends	R (>= 3.2.0)
Imports	graphics, stats, utils, plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1)
LinkingTo
Suggests	testthat, BiocStyle, knitr
SystemRequirements
Enhances
URL	http://github.com/cdeterman/OmicsMarkeR
BugReports	http://github.com/cdeterman/OmicsMarkeR/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OmicsMarkeR_1.16.0.tar.gz
Windows Binary	OmicsMarkeR_1.16.0.zip
Mac OS X 10.11 (El Capitan)	OmicsMarkeR_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OmicsMarkeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OmicsMarkeR
Package Short Url	https://bioconductor.org/packages/OmicsMarkeR/
Package Downloads Report	Download Stats