MiChip

DOI: 10.18129/B9.bioc.MiChip    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MiChip.

MiChip Parsing and Summarizing Functions

Bioconductor version: 3.9

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

Author: Jonathon Blake <blake at embl.de>

Maintainer: Jonathon Blake <blake at embl.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MiChip")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiChip")

 

PDF	R Script	MiChip miRNA Microarray Processing
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software
Version	1.38.0
In Bioconductor since	BioC 2.5 (R-2.10) (10 years)
License	GPL (>= 2)
Depends	R (>= 2.3.0), Biobase
Imports	Biobase
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MiChip_1.38.0.tar.gz
Windows Binary	MiChip_1.38.0.zip
Mac OS X 10.11 (El Capitan)	MiChip_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MiChip
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MiChip
Package Short Url	https://bioconductor.org/packages/MiChip/
Package Downloads Report	Download Stats