Mergeomics

DOI: 10.18129/B9.bioc.Mergeomics    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Mergeomics.

Integrative network analysis of omics data

Bioconductor version: 3.9

The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).

Author: Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang

Maintainer: Zeyneb Kurt <zeynebkurt at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Mergeomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mergeomics")

 

PDF	R Script	Mergeomics
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.12.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	GPL (>= 2)
Depends	R (>= 3.0.1)
Imports
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Mergeomics_1.12.0.tar.gz
Windows Binary	Mergeomics_1.12.0.zip
Mac OS X 10.11 (El Capitan)	Mergeomics_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Mergeomics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Mergeomics
Package Short Url	https://bioconductor.org/packages/Mergeomics/
Package Downloads Report	Download Stats