MTseeker

DOI: 10.18129/B9.bioc.MTseeker    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MTseeker.

Bioconductor Tools for Human Mitochondrial Variant Analysis

Bioconductor version: 3.9

Variant analysis tools for mitochondrial genetics.

Author: Tim Triche [cre, aut], Noor Sohail [aut], Ben Johnson [aut], Tim Vickers [ctb], Azif Zubair [ctb]

Maintainer: Tim Triche <tim.triche at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MTseeker")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MTseeker")

 

HTML	R Script	MTseeker example
PDF		Reference Manual

Details

biocViews	Genetics, Metabolomics, Software, VariantAnnotation
Version	1.2.0
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	GPL-3
Depends	viridis, S4Vectors, GenomeInfoDb, GenomicAlignments, VariantAnnotation
Imports	xml2, utils, gmapR, methods, IRanges, Biobase, circlize, jsonlite, graphics, Rsamtools, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, GenomicFeatures, SummarizedExperiment
LinkingTo
Suggests	MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	MTseekerData
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MTseeker_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	MTseeker_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MTseeker
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MTseeker
Package Short Url	https://bioconductor.org/packages/MTseeker/
Package Downloads Report	Download Stats