M3C

DOI: 10.18129/B9.bioc.M3C    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see M3C.

Monte Carlo Reference-based Consensus Clustering

Bioconductor version: 3.9

M3C is a consensus clustering algorithm that uses a Monte Carlo simulation to eliminate overfitting and can reject the null hypothesis K=1.

Author: Christopher John, David Watson

Maintainer: Christopher John <chris.r.john86 at gmail.com>

Citation (from within R, enter citation("M3C")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("M3C")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("M3C")

 

HTML R Script M3C
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version 1.6.0
In Bioconductor since BioC 3.6 (R-3.4) (2 years)
License AGPL-3
Depends R (>= 3.5.0)
Imports ggplot2, Matrix, doSNOW, NMF, RColorBrewer, cluster, parallel, foreach, doParallel, matrixcalc, dendextend, sigclust, Rtsne, survival, corpcor, umap
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package M3C_1.6.0.tar.gz
Windows Binary M3C_1.6.0.zip
Mac OS X 10.11 (El Capitan) M3C_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/M3C
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/M3C
Package Short Url https://bioconductor.org/packages/M3C/
Package Downloads Report Download Stats

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