This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see IsoformSwitchAnalyzeR.
Bioconductor version: 3.9
IsoformSwitchAnalyzeR enables identification and analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification by Kallisto, Salmon, Cufflinks/Cuffdiff, RSEM etc.
Author: Kristoffer Vitting-Seerup
Maintainer: Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>
Citation (from within R,
enter citation("IsoformSwitchAnalyzeR")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("IsoformSwitchAnalyzeR")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IsoformSwitchAnalyzeR")
HTML | R Script | IsoformSwitchAnalyzeR |
Reference Manual | ||
Text | NEWS |
Follow Installation instructions to use this package in your R session.
Source Package | IsoformSwitchAnalyzeR_1.6.0.tar.gz |
Windows Binary | IsoformSwitchAnalyzeR_1.6.0.zip |
Mac OS X 10.11 (El Capitan) | IsoformSwitchAnalyzeR_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/IsoformSwitchAnalyzeR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IsoformSwitchAnalyzeR |
Package Short Url | https://bioconductor.org/packages/IsoformSwitchAnalyzeR/ |
Package Downloads Report | Download Stats |
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