DOI: 10.18129/B9.bioc.HTSFilter    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see HTSFilter.

Filter replicated high-throughput transcriptome sequencing data

Bioconductor version: 3.9

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic

Maintainer: Andrea Rau <andrea.rau at>

Citation (from within R, enter citation("HTSFilter")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Normalization, Preprocessing, RNASeq, Sequencing, Software
Version 1.24.0
In Bioconductor since BioC 2.12 (R-3.0) (6.5 years)
License Artistic-2.0
Depends R (>= 3.4)
Imports edgeR(>= 3.9.14), DESeq2(>= 1.10.1), DESeq(>= 1.22.1), BiocParallel(>= 1.4.3), Biobase, utils, stats, grDevices, graphics, methods
Suggests EDASeq(>= 2.1.4), BiocStyle, testthat
Depends On Me
Imports Me coseq
Suggests Me
Links To Me
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