GSReg

DOI: 10.18129/B9.bioc.GSReg    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GSReg.

Gene Set Regulation (GS-Reg)

Bioconductor version: 3.9

A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).

Author: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSReg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSReg")

 

PDF	R Script	Working with the GSReg package
PDF		Reference Manual

Details

biocViews	AlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	GPL-2
Depends	R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi
Imports
LinkingTo
Suggests	GenomicRanges, GSBenchMark
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSReg_1.18.0.tar.gz
Windows Binary	GSReg_1.18.0.zip
Mac OS X 10.11 (El Capitan)	GSReg_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GSReg
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GSReg
Package Short Url	https://bioconductor.org/packages/GSReg/
Package Downloads Report	Download Stats