GRmetrics

DOI: 10.18129/B9.bioc.GRmetrics    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GRmetrics.

Calculate growth-rate inhibition (GR) metrics

Bioconductor version: 3.9

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Author: Nicholas Clark

Maintainer: Nicholas Clark <nicholas.clark00 at gmail.com>, Mario Medvedovic <medvedm at ucmail.uc.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GRmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRmetrics")

 

HTML	R Script	GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, CellBiology, ImmunoOncology, Software, TimeCourse, Visualization
Version	1.10.0
In Bioconductor since	BioC 3.4 (R-3.3) (3 years)
License	GPL-3
Depends	R (>= 3.3), SummarizedExperiment
Imports	drc, plotly, ggplot2, S4Vectors
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/uc-bd2k/GRmetrics
BugReports	https://github.com/uc-bd2k/GRmetrics/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GRmetrics_1.10.0.tar.gz
Windows Binary	GRmetrics_1.10.0.zip
Mac OS X 10.11 (El Capitan)	GRmetrics_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GRmetrics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GRmetrics
Package Short Url	https://bioconductor.org/packages/GRmetrics/
Package Downloads Report	Download Stats