EBSEA

DOI: 10.18129/B9.bioc.EBSEA    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see EBSEA.

Exon Based Strategy for Expression Analysis of genes

Bioconductor version: 3.9

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author: Arfa Mehmood, Asta Laiho, Laura L. Elo

Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSEA")

 

PDF	R Script	EBSEA: Exon Based Strategy for Expression Analysis of genes
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, Sequencing, Software
Version	1.12.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	GPL-2
Depends
Imports	edgeR, limma, graphics, stats, plyr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EBSEA_1.12.0.tar.gz
Windows Binary	EBSEA_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	EBSEA_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EBSEA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EBSEA
Package Short Url	https://bioconductor.org/packages/EBSEA/
Package Downloads Report	Download Stats