BEAT

DOI: 10.18129/B9.bioc.BEAT    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BEAT.

BEAT - BS-Seq Epimutation Analysis Toolkit

Bioconductor version: 3.9

Model-based analysis of single-cell methylation data

Author: Kemal Akman <akman at mpipz.mpg.de>

Maintainer: Kemal Akman <akman at mpipz.mpg.de>

Citation (from within R, enter citation("BEAT")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEAT")

 

PDF R Script Analysing single-cell BS-Seq data with the "BEAT" package
PDF   Reference Manual

Details

biocViews DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software
Version 1.22.0
In Bioconductor since BioC 2.14 (R-3.1) (5.5 years)
License LGPL (>= 3.0)
Depends R (>= 2.13.0)
Imports GenomicRanges, ShortRead, Biostrings, BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BEAT_1.22.0.tar.gz
Windows Binary BEAT_1.22.0.zip
Mac OS X 10.11 (El Capitan) BEAT_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BEAT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BEAT
Package Short Url https://bioconductor.org/packages/BEAT/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: