example_proteome {proBatch}R Documentation

Example protein data in long format

Description

This is data from Aging study with all iRT, spike-in peptides, few random peptides and QTL proteins for biological signal improvement demonstration

Usage

example_proteome

Format

A data frame with 124655 rows and 5 variables:

peptide_group_label

peptide ID, which is regular feature level. This column is mostly used as feature_id_col

Intensity

peptide group intensity in given sample. Used in function as measure_col

ProteinName

Protein group ID, specified as N/UniProtID1|UniProtID2|..., where N is number of protein peptide group maps to. If 1/UniProtID, then this is proteotypic peptide

Gene

conventional gene name of corresponding ProteinName

FullRunName

name of the file, in most functions used for sample_id_col

...

Source

PRIDE ID will be added in future


[Package proBatch version 1.0.0 Index]