normalize_data {proBatch}R Documentation

Normalization brings the samples to the same scale

Description

Normalization brings the samples to the same scale

Usage

normalize_data(data_matrix, normalizeFunc = c("quantile",
  "medianCentering"), log_base = NULL)

Arguments

data_matrix

raw data matrix (features in rows and samples in columns)

normalizeFunc

global batch normalization method ('quantile' or 'MedianCentering')

log_base

whether to log transform data matrix before normalization ('NULL', '2' or '10')

Value

data_matrix-size matrix, with columns normalized

Examples

quantile_normalized_matrix <- normalize_data(example_proteome_matrix, 
normalizeFunc = "quantile", log_base = 2)


[Package proBatch version 1.0.0 Index]