appreci8R-package |
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV |
annotate |
Annotate and filter calls |
appreci8 |
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV |
appreci8R |
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV |
appreci8Rshiny |
A user interface to perform the whole appreci8-analysis |
combineOutput |
Combine output of different variant calling tools |
determineCharacteristics |
Determine characteristics of the calls |
evaluateCovAndBQ |
Evaluate coverage and base quality |
filterTarget |
Excludes all off-target calls from further analysis. |
finalFiltration |
Perform final filtration according to the appreci8-algorithm |
normalize |
Normalize calls |
Variant Filtration |
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV |