Inferring functionally related proteins using protein interaction networks


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Documentation for package ‘PPInfer’ version 1.10.0

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PPInfer-package Inferring functionally related proteins using protein interaction networks
enrich.net Visualize network for the functional enrichment analysis
GSEA.barplot Visualize the gene set enrichment analysis
net.infer Inferring functionally related proteins using networks
net.infer.ST Inferring functionally related proteins with self training
net.kernel Kernel matrix for a graph
ORA Over-representation Analysis
ORA.barplot Visualize the over-representation analysis
ppi.infer.human Inferring functionally related proteins using protein networks for human
ppi.infer.mouse Inferring functionally related proteins using protein networks for mouse
PPInfer Inferring functionally related proteins using protein interaction networks
self.train.kernel Self training for a kernel matrix