Constructing gene regulatory networks from expression data through functional module inference


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Documentation for package ‘GNET2’ version 1.0.0

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build_module Fit a regression tree.
build_moduleR Build regression tree.
build_moduleR_heuristic Build regression tree with splits are detemined by K-means heuristicly.
calc_likelihood_score Calculate Gaussian Likelihood score.
get_correlation_list Calculate correlation within each group.
gnet Run GNET2
kneepointDetection Knee point detection.
plot_gene_group Plot a module
plot_group_correlation Plot the correlation of each group
plot_tree Plot the regression tree.