Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms


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Documentation for package ‘DeMixT’ version 1.0.4

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DeMixT Deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
DeMixT_S1 Estimates the proportions of mixed samples for each mixing component
DeMixT_S2 Deconvolves expressions of each individual sample for unknown component
Optimum_KernelC Kernel function for optimizing parameters and hidden variables in DeMixT
test.data1.comp1 simulated two-component test data
test.data1.truth simulated two-component test data
test.data1.y simulated two-component test data
test.data2.comp1 simulated three-component test data
test.data2.comp2 simulated three-component test data
test.data2.truth simulated three-component test data
test.data2.y simulated three-component test data
test.data3.comp1 three-component mixed cell line test data
test.data3.comp2 three-component mixed cell line test data
test.data3.truth three-component mixed cell line test data
test.data3.y three-component mixed cell line test data