Tool for Evaluation of Cell Identity from Transcription Profiles


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Documentation for package ‘CellScore’ version 1.4.0

Help Pages

BarplotOnOff Pyramid barplot of on/off scores
BoxplotCellScore Boxplot of the CellScore values across test samples
CellScore CellScore evaluates the identity of cells undergoing cell type transition
CellScoreReport Generate a CellScore report
CosineSimScore Cosine similarity score
extractTransitions Extract scores for given cell transitions
heatmapOnOffMarkers heatmapOnOffMarkers
OnOff On/off score
PcaStandards PCA plot on the most variable portion of the standard expression dataset
PlotCosineSimHeatmap Plot heatmap of the cosine similarity score
RugplotCellScore RugplotCellScore
rugplotDonorTargetTest rugplotDonorTargetTest
ScatterplotCellScoreComponents Scatterplot of the the donor-like and target-like scores
scatterplotDonorTargetTest scatterplotDonorTargetTest