Nearest Neighbor Detection for Bioconductor Packages


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Documentation for package ‘BiocNeighbors’ version 1.2.0

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AnnoyIndex The AnnoyIndex class
AnnoyIndex-class The AnnoyIndex class
AnnoyIndex_path The AnnoyIndex class
AnnoyIndex_search_mult The AnnoyIndex class
AnnoyParam The AnnoyParam class
AnnoyParam-class The AnnoyParam class
AnnoyParam_directory The AnnoyParam class
AnnoyParam_ntrees The AnnoyParam class
AnnoyParam_search_mult The AnnoyParam class
BiocNeighborIndex-class The BiocNeighborIndex class
BiocNeighborParam-class The BiocNeighborParam class
BiocNeighbors-algorithms Neighbor search algorithms
BiocNeighbors-raw-index Reporting raw indices
BiocNeighbors-ties Handling tied distances
bndata The BiocNeighborIndex class
bndata-method The BiocNeighborIndex class
bndistance The BiocNeighborIndex class
bndistance-method The BiocNeighborIndex class
bndistance-method The BiocNeighborParam class
bnorder The BiocNeighborIndex class
bnorder-method The BiocNeighborIndex class
buildAnnoy Build an Annoy index
buildHnsw Build a HNSW index
buildIndex Build a nearest-neighbor index
buildIndex-method Build a nearest-neighbor index
buildKmknn Pre-cluster points with k-means
buildVptree Build a VP tree
dim-method The BiocNeighborIndex class
dimnames-method The BiocNeighborIndex class
findAnnoy Find nearest neighbors
findHnsw Find nearest neighbors
findKmknn Find nearest neighbors
findKNN Find k-nearest neighbors
findKNN-method Find k-nearest neighbors
findNeighbors Find all neighbors in range
findNeighbors-method Find all neighbors in range
findVptree Find nearest neighbors
HnswIndex The HnswIndex class
HnswIndex-class The HnswIndex class
HnswIndex_ef_search The HnswIndex class
HnswIndex_path The HnswIndex class
HnswParam The HnswParam class
HnswParam-class The HnswParam class
HnswParam_directory The HnswParam class
HnswParam_ef_construction The HnswParam class
HnswParam_ef_search The HnswParam class
HnswParam_nlinks The HnswParam class
KmknnIndex The KmknnIndex class
KmknnIndex-class The KmknnIndex class
KmknnIndex_cluster_centers The KmknnIndex class
KmknnIndex_cluster_info The KmknnIndex class
KmknnParam The KmknnParam class
KmknnParam-class The KmknnParam class
KmknnParam_kmeans_args The KmknnParam class
queryAnnoy Query nearest neighbors
queryHnsw Query nearest neighbors
queryKmknn Query nearest neighbors
queryKNN Query k-nearest neighbors
queryKNN-method Query k-nearest neighbors
queryNeighbors Query all neighbors
queryNeighbors-method Query all neighbors
queryVptree Query nearest neighbors
rangeFindKmknn Find all neighbors in range
rangeFindVptree Find all neighbors in range
rangeQueryKmknn Query neighbors in range
rangeQueryVptree Query neighbors in range
show-method The AnnoyIndex class
show-method The AnnoyParam class
show-method The BiocNeighborIndex class
show-method The BiocNeighborParam class
show-method The HnswIndex class
show-method The HnswParam class
show-method The KmknnIndex class
show-method The KmknnParam class
VptreeIndex The VptreeIndex class
VptreeIndex-class The VptreeIndex class
VptreeIndex_nodes The VptreeIndex class
VptreeParam The VptreeParam class
VptreeParam-class The VptreeParam class