scRNAseq

DOI: 10.18129/B9.bioc.scRNAseq    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see scRNAseq.

A Collection of Public Single-Cell RNA-Seq Datasets

Bioconductor version: 3.8

Gene-level read counts of three public scRNA-seq datasets. See vignette for details.

Author: Davide Risso [aut, cre, cph], Michael Cole [aut]

Maintainer: Davide Risso <risso.davide at gmail.com>

Citation (from within R, enter citation("scRNAseq")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("scRNAseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scRNAseq")

 

HTML R Script scRNAseq
PDF   Reference Manual

Details

biocViews ExperimentData, ExpressionData, RNASeqData, SequencingData
Version 1.8.0
License CC0
Depends R (>= 3.3), SummarizedExperiment
Imports
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me simpleSingleCell
Imports Me
Suggests Me clusterExperiment, iSEE, scFeatureFilter, scone, SingleCellExperiment, singleCellTK, SummarizedBenchmark, zinbwave
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scRNAseq_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/scRNAseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scRNAseq
Package Short Url http://bioconductor.org/packages/scRNAseq/
Package Downloads Report Download Stats

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