bladderbatch

DOI: 10.18129/B9.bioc.bladderbatch    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see bladderbatch.

Bladder gene expression data illustrating batch effects

Bioconductor version: 3.8

This package contains microarray gene expression data on 57 bladder samples from 5 batches. The data are used as an illustrative example for the sva package.

Author: Jeffrey T. Leek <jleek at jhsph.edu>

Maintainer: Jeffrey T. Leek <jleek at jhsph.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("bladderbatch")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bladderbatch")

 

PDF	R Script	bladderbatchTutorial
PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, MicroarrayData
Version	1.20.0
License	Artistic-2.0
Depends	Biobase
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	MAGeCKFlute, RUVcorr
Suggests Me	Harman, singleCellTK, sva
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bladderbatch_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/bladderbatch
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bladderbatch
Package Short Url	http://bioconductor.org/packages/bladderbatch/
Package Downloads Report	Download Stats