TCGAWorkflowData

DOI: 10.18129/B9.bioc.TCGAWorkflowData    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see TCGAWorkflowData.

Data for TCGA Workflow

Bioconductor version: 3.8

This experimental data package contains 11 data sets necessary to follow the "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages".

Author: Tiago Chedraoui Silva <tiagochst at usp.br>

Maintainer: Tiago Chedraoui Silva <tiagochst at usp.br>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("TCGAWorkflowData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCGAWorkflowData")

 

HTML	R Script	'Example data for TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages'
PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, Homo_sapiens_Data, MicroarrayData
Version	1.6.0
License	GPL-3
Depends	R (>= 3.4.0)
Imports	SummarizedExperiment
LinkingTo
Suggests	knitr, rmarkdown, pander, testthat
SystemRequirements
Enhances
URL	https://f1000research.com/articles/5-1542/v2
BugReports	https://github.com/BioinformaticsFMRP/TCGAWorkflow/issues
Depends On Me
Imports Me	TCGAWorkflow
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TCGAWorkflowData_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/TCGAWorkflowData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TCGAWorkflowData
Package Short Url	http://bioconductor.org/packages/TCGAWorkflowData/
Package Downloads Report	Download Stats