Mulder2012

DOI: 10.18129/B9.bioc.Mulder2012    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Mulder2012.

Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

Bioconductor version: 3.8

This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.

Author: Xin Wang <Xin.Wang at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Xin Wang <Xin.Wang at cancer.org.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Mulder2012")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mulder2012")

 

PDF	R Script	Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF		Reference Manual
Text		NEWS

Details

biocViews	CancerData, ExperimentData, StemCell
Version	0.22.0
License	Artistic-2.0
Depends	R (>= 2.14), org.Hs.eg.db, KEGG.db
Imports	igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS
LinkingTo
Suggests	snow
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Mulder2012_0.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/Mulder2012
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Mulder2012
Package Short Url	http://bioconductor.org/packages/Mulder2012/
Package Downloads Report	Download Stats