mirna2targetscan.Rd
From a list of miRNA names, find their targets in targetscan.Hs.eg.db annotation package.
mirna2targetscan(mirna, species = "hsa", org = NULL, keytype = NULL)
mirna | Character vector with miRNA names as in miRBase 21. |
---|---|
species | hsa or mmu supported right now. |
org |
|
keytype | Character mentioning the gene id to use.
For example, |
data.frame with 4 columns:
miRFamily
Seedmatch
PCT
entrezGene
library(targetscan.Hs.eg.db)#> Error in library(targetscan.Hs.eg.db): there is no package called ‘targetscan.Hs.eg.db’mirna2targetscan(c("hsa-miR-34c-5p"))#> Error in keys(targetscan.Hs.egMIRNA): object 'targetscan.Hs.egMIRNA' not found