DOI: 10.18129/B9.bioc.tximeta    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see tximeta.

Transcript Quantification Import with Automatic Metadata

Bioconductor version: 3.8

Transcript quantification import from Salmon with automatic population of metadata and transcript ranges. Filtered, combined, or de novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for reproducible analyses.

Author: Michael Love [aut, cre], Rob Patro [aut, ctb], Peter Hickey [aut, ctb], Charlotte Soneson [aut, ctb]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("tximeta")):


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if (!requireNamespace("BiocManager", quietly = TRUE))

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biocViews Annotation, DataImport, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software, Transcription, Transcriptomics
Version 1.0.3
In Bioconductor since BioC 3.8 (R-3.5) (0.5 years)
License GPL-2
Imports SummarizedExperiment, tximport, jsonlite, S4Vectors, AnnotationDbi, GenomicFeatures, ensembldb, BiocFileCache, tibble, GenomeInfoDb, rappdirs, utils, methods
Suggests knitr, rmarkdown, testthat, tximportData, org.Dm.eg.db, DESeq2, devtools
Depends On Me
Imports Me
Suggests Me scater
Links To Me
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Source Package tximeta_1.0.3.tar.gz
Windows Binary tximeta_1.0.3.zip
Mac OS X 10.11 (El Capitan) tximeta_1.0.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/tximeta
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tximeta
Package Short Url http://bioconductor.org/packages/tximeta/
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