DOI: 10.18129/B9.bioc.tenXplore    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see tenXplore.

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Bioconductor version: 3.8

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

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PDF R Script tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons
PDF   Reference Manual


biocViews DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics
Version 1.4.1
In Bioconductor since BioC 3.6 (R-3.4) (1.5 years)
License Artistic-2.0
Depends R (>= 3.4), shiny, restfulSE(>= 0.99.12)
Imports methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils
Suggests org.Hs.eg.db, testthat, knitr
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Source Package tenXplore_1.4.1.tar.gz
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