statTarget

DOI: 10.18129/B9.bioc.statTarget    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see statTarget.

Statistical Analysis of Molecular Profiles

Bioconductor version: 3.8

A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.

Author: Hemi Luan

Maintainer: Hemi Luan <hemi.luan at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("statTarget")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("statTarget")

 

HTML	R Script	statTarget2 On using the Graphical User Interface
PDF		Reference Manual
Text		NEWS

Details

biocViews	BatchEffect, DifferentialExpression, GUI, ImmunoOncology, Machine Learning, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, Proteomics, QualityControl, Software, Visualization
Version	1.12.1
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	LGPL (>= 3)
Depends	R (>= 3.3.0)
Imports	randomForest, plyr, pdist, ROC, utils, grDevices, graphics, rrcov, stats, pls, impute
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown, gWidgets2, gWidgets2RGtk2, RGtk2
SystemRequirements
Enhances
URL	https://stattarget.github.io
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	statTarget_1.12.1.tar.gz
Windows Binary	statTarget_1.12.1.zip
Mac OS X 10.11 (El Capitan)	statTarget_1.12.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/statTarget
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/statTarget
Package Short Url	http://bioconductor.org/packages/statTarget/
Package Downloads Report	Download Stats