spkTools

DOI: 10.18129/B9.bioc.spkTools    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see spkTools.

Methods for Spike-in Arrays

Bioconductor version: 3.8

The package contains functions that can be used to compare expression measures on different array platforms.

Author: Matthew N McCall <mccallm at gmail.com>, Rafael A Irizarry <rafa at jhu.edu>

Maintainer: Matthew N McCall <mccallm at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("spkTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spkTools")

 

PDF	R Script	spkTools: Spike-in Data Analysis and Visualization
PDF		Reference Manual

Details

biocViews	Microarray, Software, Technology
Version	1.38.0
In Bioconductor since	BioC 2.4 (R-2.9) (10 years)
License	GPL (>= 2)
Depends	R (>= 2.7.0), Biobase(>= 2.5.5)
Imports	Biobase(>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils
LinkingTo
Suggests	xtable
SystemRequirements
Enhances
URL	http://bioconductor.org
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	spkTools_1.38.0.tar.gz
Windows Binary	spkTools_1.38.0.zip
Mac OS X 10.11 (El Capitan)	spkTools_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/spkTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spkTools
Package Short Url	http://bioconductor.org/packages/spkTools/
Package Downloads Report	Download Stats