DOI: 10.18129/B9.bioc.siggenes    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see siggenes.

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 3.8

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at>

Citation (from within R, enter citation("siggenes")):


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PDF R Script siggenes Manual
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biocViews DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software
Version 1.56.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14 years)
License LGPL (>= 2)
Depends methods, Biobase, multtest, splines, graphics
Imports stats4
Suggests affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
Depends On Me KCsmart
Imports Me charm, coexnet, DAPAR, DeSousa2013, GeneSelector, minfi, XDE
Suggests Me GeneSelector, logicFS, trio
Links To Me
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