siggenes

DOI: 10.18129/B9.bioc.siggenes    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see siggenes.

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 3.8

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("siggenes")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("siggenes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("siggenes")

 

PDF R Script siggenes Manual
PDF   Reference Manual

Details

biocViews DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software
Version 1.56.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14 years)
License LGPL (>= 2)
Depends methods, Biobase, multtest, splines, graphics
Imports stats4
LinkingTo
Suggests affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
SystemRequirements
Enhances
URL
Depends On Me KCsmart
Imports Me charm, coexnet, DAPAR, DeSousa2013, GeneSelector, minfi, XDE
Suggests Me GeneSelector, logicFS, trio
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package siggenes_1.56.0.tar.gz
Windows Binary siggenes_1.56.0.zip
Mac OS X 10.11 (El Capitan) siggenes_1.56.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/siggenes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/siggenes
Package Short Url http://bioconductor.org/packages/siggenes/
Package Downloads Report Download Stats

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